Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ftsLCell division protein FtsL. (169 aa)    
Predicted Functional Partners:
divIB
Cell division protein DivIB; Essential cell division protein.
  
 
 0.978
rsmH
Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
  
 0.962
mraZ
Protein MraZ; Belongs to the MraZ family.
  
  
 0.905
spoVD_2
Stage V sporulation protein D.
  
 
 0.901
ftsB
Cell division protein FtsB.
    
 
 0.879
ftsW_1
Lipid II flippase FtsW; Belongs to the SEDS family.
  
 
 0.868
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
  
 
 0.808
ftsW_2
Lipid II flippase FtsW; Belongs to the SEDS family.
  
 
 0.806
pbp
Beta-lactam-inducible penicillin-binding protein.
  
 
 0.797
spoVD_1
Stage V sporulation protein D.
  
 
 0.797
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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