Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM81057.1Hypothetical protein. (140 aa)    
Predicted Functional Partners:
ytrF
ABC transporter permease YtrF precursor.
  
     0.628
kdpD_1
Sensor protein KdpD.
  
     0.593
rho
Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
   
    0.577
OOM74349.1
Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
  
     0.568
bmrR_4
Multidrug-efflux transporter 1 regulator.
 
     0.562
OOM75899.1
Hypothetical protein.
  
     0.517
purR_1
Pur operon repressor.
   
    0.502
ybiT_1
Putative ABC transporter ATP-binding protein YbiT.
       0.478
OOM74350.1
Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
  
     0.474
OOM81859.1
Hypothetical protein.
  
     0.470
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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