Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
chbR_1HTH-type transcriptional regulator ChbR. (334 aa)    
Predicted Functional Partners:
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 0.749
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.723
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
     
 0.723
melR_8
Melibiose operon regulatory protein.
  
 
   0.700
araC_1
Arabinose operon regulatory protein.
 
 
 0.693
rhaS_6
HTH-type transcriptional activator RhaS.
  
     0.618
marA_1
Multiple antibiotic resistance protein MarA.
  
   0.594
adaA_7
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
     0.573
rhaB
Rhamnulokinase.
  
   
 0.573
adaA_4
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
     0.559
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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