Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
OOM80861.1Putative amidase domain protein. (358 aa)    
Predicted Functional Partners:
OOM80860.1
Hypothetical protein.
       0.773
OOM80862.1
Hypothetical protein.
       0.545
moaA_1
Cyclic pyranopterin monophosphate synthase.
  
     0.464
bepA
Beta-barrel assembly-enhancing protease.
  
     0.455
cpdA_2
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA.
  
     0.424
smc_1
Chromosome partition protein Smc.
  
     0.411
gdhA
NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
    0.404
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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