Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM80744.1Hypothetical protein. (307 aa)    
Predicted Functional Partners:
OOM73725.1
Hypothetical protein.
  
     0.762
OOM82123.1
Collagen triple helix repeat.
 
   
 0.716
OOM73385.1
Putative phosphatase regulatory subunit.
 
   
 0.662
OOM74056.1
Collagen triple helix repeat.
  
     0.596
OOM74598.1
Hypothetical protein.
  
    0.572
blaI
Penicillinase repressor.
    
  0.543
mecR1
Methicillin resistance mecR1 protein.
     
  0.502
OOM82109.1
Collagen triple helix repeat.
 
   
 0.466
znuB
High-affinity zinc uptake system membrane protein ZnuB.
   
  
 0.435
trxB_1
Thioredoxin reductase.
    
  0.431
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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