Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
comC_1Type 4 prepilin-like protein leader peptide-processing enzyme; Belongs to the peptidase A24 family. (203 aa)    
Predicted Functional Partners:
epsF_1
Type II secretion system protein F.
 
  
 0.908
gspE
Putative type II secretion system protein E.
 
 
 0.886
pilT
Twitching mobility protein.
 
   
 0.800
OOM72295.1
Hypothetical protein.
 
  
 0.785
comEA
ComE operon protein 1.
  
  
 0.762
pilE
Fimbrial protein precursor.
 
  
 0.716
OOM80581.1
Hypothetical protein.
       0.700
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
  
 0.596
OOM80583.1
Bacterial type II secretion system protein F domain protein.
     
 0.587
OOM79270.1
Hypothetical protein.
   
  
 0.586
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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