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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacZ_1Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family. (761 aa)    
Predicted Functional Partners:
uxaC
Uronate isomerase.
 
 
 0.899
OOM80617.1
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.849
tabA
Toxin-antitoxin biofilm protein TabA.
   
 0.834
OOM76696.1
Bacterial alpha-L-rhamnosidase.
 
 0.814
OOM75614.1
Bacterial alpha-L-rhamnosidase.
 
 0.814
OOM81065.1
Bacterial alpha-L-rhamnosidase.
 
 0.805
OOM76059.1
Bacterial alpha-L-rhamnosidase.
 
 0.805
mro
Aldose 1-epimerase precursor; Converts alpha-aldose to the beta-anomer.
 
 
 0.803
gno
Gluconate 5-dehydrogenase.
 
 
 0.794
OOM82360.1
3-ketoacyl-(acyl-carrier-protein) reductase.
 
 
 0.784
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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