STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frp_1NADPH-flavin oxidoreductase. (173 aa)    
Predicted Functional Partners:
nasF
uroporphyrinogen-III C-methyltransferase.
  
 
 0.728
grsB_3
Gramicidin S synthase 2.
  
 
 0.663
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.640
flr_2
Flavoredoxin.
 
 
 0.592
gloA
Lactoylglutathione lyase.
  
    0.558
OOM78375.1
Iron-sulfur flavoprotein.
  
  
 0.546
ybhS
Inner membrane transport permease YbhS.
  
  
 0.540
OOM79028.1
ABC-2 family transporter protein.
  
  
 0.540
ybhR
Inner membrane transport permease YbhR.
  
  
 0.540
flr_1
Flavoredoxin.
 
 
 0.537
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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