Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOM80263.1Anaerobic benzoate catabolism transcriptional regulator. (433 aa)    
Predicted Functional Partners:
OOM80264.1
Helix-turn-helix domain protein.
 
  
0.868
ycf3
Photosystem I assembly protein Ycf3.
  
  
  0.823
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.813
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.813
OOM74341.1
Hypothetical protein.
  
  
  0.790
OOM80260.1
Hypothetical protein.
 
     0.779
OOM81937.1
Hypothetical protein.
  
    0.761
OOM75281.1
Endodeoxyribonuclease RusA.
  
     0.760
OOM73464.1
CYTH domain protein.
 
     0.755
OOM75027.1
Flagellar hook-length control protein FliK.
  
     0.754
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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