Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OOM80264.1Helix-turn-helix domain protein. (421 aa)    
Predicted Functional Partners:
OOM80263.1
Anaerobic benzoate catabolism transcriptional regulator.
 
  
0.868
bepA
Beta-barrel assembly-enhancing protease.
  
  
 0.827
ycf3
Photosystem I assembly protein Ycf3.
  
  
  0.826
OOM80260.1
Hypothetical protein.
 
     0.822
OOM74341.1
Hypothetical protein.
  
  
  0.817
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.813
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.813
OOM73776.1
Putative RNA polymerase sigma factor SigI.
  
     0.772
OOM81937.1
Hypothetical protein.
  
    0.771
OOM72057.1
Hypothetical protein.
  
    0.771
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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