Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM80268.1DNA-binding transcriptional activator PspC. (73 aa)    
Predicted Functional Partners:
OOM75739.1
Phage shock protein A homolog.
  
 
 0.897
OOM71297.1
Hypothetical protein.
  
 
 0.895
barA_3
Signal transduction histidine-protein kinase BarA.
   
 
 0.829
barA_4
Signal transduction histidine-protein kinase BarA.
   
 
 0.829
evgS
Sensor protein EvgS precursor.
   
 
 0.829
barA_2
Signal transduction histidine-protein kinase BarA.
   
 
 0.820
OOM76852.1
Hypothetical protein.
   
 
 0.820
OOM70739.1
Membrane protein of unknown function.
  
  
 0.795
barA_1
Signal transduction histidine-protein kinase BarA.
   
 
 0.771
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
   
 
 0.715
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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