STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIAB_1Anti-sigma F factor. (127 aa)    
Predicted Functional Partners:
rsbV
anti-sigma-B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 0.995
rsbP
Phosphoserine phosphatase RsbP.
 
 
 0.929
barA_3
Signal transduction histidine-protein kinase BarA.
  
 
 0.910
barA_4
Signal transduction histidine-protein kinase BarA.
  
 
 0.910
evgS
Sensor protein EvgS precursor.
  
 
 0.910
spoIIAA
Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.898
sigF_1
RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.890
ycdT_1
Putative diguanylate cyclase YcdT.
 
 
 0.886
OOM70744.1
Hypothetical protein.
  
 0.863
OOM70745.1
Hypothetical protein.
  
 0.863
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.