Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
tktATransketolase 1. (273 aa)    
Predicted Functional Partners:
dxs_2
1-deoxy-D-xylulose-5-phosphate synthase.
 0.999
dxs_4
1-deoxy-D-xylulose-5-phosphate synthase.
 0.998
dxs_5
1-deoxy-D-xylulose-5-phosphate synthase.
 0.998
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.941
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.802
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
     
 0.802
pheA
P-protein.
    
  0.800
ywlF
Putative sugar phosphate isomerase YwlF.
 
  
 0.771
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
    
  0.751
bglF_2
PTS system beta-glucoside-specific EIIBCA component.
    
  0.751
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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