Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fhaBFHA domain-containing protein FhaB. (147 aa)    
Predicted Functional Partners:
ycdT_2
Putative diguanylate cyclase YcdT.
  
 
 0.974
prkC_2
Serine/threonine-protein kinase PrkC.
 
 
 
 0.962
prkC_1
Serine/threonine-protein kinase PrkC.
 
 
 
 0.961
cph2_4
Phytochrome-like protein cph2.
  
 0.950
pbpA
Penicillin-binding protein A.
 
  
 0.925
ftsW_2
Lipid II flippase FtsW; Belongs to the SEDS family.
 
  
 0.920
cqsS_1
CAI-1 autoinducer sensor kinase/phosphatase CqsS.
  
 
 0.880
OOM76328.1
Hypothetical protein.
  
 0.876
spoVD_2
Stage V sporulation protein D.
   
 0.851
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
  
 
 0.845
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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