Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOM79594.1Transcriptional regulator PadR-like family protein. (183 aa)    
Predicted Functional Partners:
OOM75530.1
Putative HTH-type transcriptional regulator.
  
  
 0.477
fldZ_1
2-enoate reductase FldZ.
  
    0.449
OOM75355.1
Hypothetical protein.
  
     0.415
thrC
Threonine synthase.
     
  0.414
thrB_1
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
     
  0.414
tdcB
L-threonine dehydratase catabolic TdcB.
     
  0.414
OOM73854.1
Hypothetical protein.
 
     0.410
cobB_1
NAD-dependent protein deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
    0.407
cobB_3
NAD-dependent protein deacetylase.
  
    0.407
nlhH
Carboxylesterase NlhH.
 
     0.400
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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