yvyD protein (Clostridium puniceum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Clostridium puniceum

NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OOM75737.1	rplJ	CLPUN_30920	CLPUN_08870	30S ribosomal protein S1 homolog.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.966
OOM75737.1	rpmC	CLPUN_30920	CLPUN_09040	30S ribosomal protein S1 homolog.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.935
OOM75737.1	rpsB	CLPUN_30920	CLPUN_47660	30S ribosomal protein S1 homolog.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.989
OOM75737.1	rpsC	CLPUN_30920	CLPUN_09020	30S ribosomal protein S1 homolog.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.986
OOM75737.1	rpsF	CLPUN_30920	CLPUN_49960	30S ribosomal protein S1 homolog.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.976
OOM75737.1	rpsI	CLPUN_30920	CLPUN_09320	30S ribosomal protein S1 homolog.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.977
OOM75737.1	rpsO	CLPUN_30920	CLPUN_47850	30S ribosomal protein S1 homolog.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.967
OOM75737.1	rpsQ	CLPUN_30920	CLPUN_09050	30S ribosomal protein S1 homolog.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.978
OOM75737.1	rpsR	CLPUN_30920	CLPUN_49980	30S ribosomal protein S1 homolog.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.978
OOM75737.1	yvyD	CLPUN_30920	CLPUN_16420	30S ribosomal protein S1 homolog.	Putative sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.	0.906
rplJ	OOM75737.1	CLPUN_08870	CLPUN_30920	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S1 homolog.	0.966
rplJ	rpmC	CLPUN_08870	CLPUN_09040	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.996
rplJ	rpsB	CLPUN_08870	CLPUN_47660	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.988
rplJ	rpsC	CLPUN_08870	CLPUN_09020	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.992
rplJ	rpsF	CLPUN_08870	CLPUN_49960	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.988
rplJ	rpsI	CLPUN_08870	CLPUN_09320	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.990
rplJ	rpsO	CLPUN_08870	CLPUN_47850	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.985
rplJ	rpsQ	CLPUN_08870	CLPUN_09050	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.991
rplJ	rpsR	CLPUN_08870	CLPUN_49980	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.986
rplJ	yvyD	CLPUN_08870	CLPUN_16420	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Putative sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.	0.882