STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM79294.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
grsB_3
Gramicidin S synthase 2.
    
 0.897
OOM80987.1
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.792
proC_2
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.757
mbtB_1
Phenyloxazoline synthase MbtB.
     
 0.757
dhbF
Dimodular nonribosomal peptide synthase.
     
 0.755
puuB
Gamma-glutamylputrescine oxidoreductase.
   
 0.704
bioB
Biotin synthase.
  
 
 0.656
hndC_2
NADP-reducing hydrogenase subunit HndC.
    
 0.636
gshAB
Glutathione biosynthesis bifunctional protein GshAB; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; In the N-terminal section; belongs to the glutamate--cysteine ligase type 1 family. Type 2 subfamily.
  
 
 0.626
metH
Methionine synthase.
 
  
 0.611
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.