Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM79017.1Carboxymuconolactone decarboxylase family protein. (108 aa)    
Predicted Functional Partners:
OOM79019.1
Hypothetical protein.
 
     0.827
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
  0.823
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
  0.823
OOM79018.1
Hypothetical protein.
       0.773
acpS_2
Holo-[acyl-carrier-protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
       0.693
tcmN
Multifunctional cyclase-dehydratase-3-O-methyl transferase TcmN.
       0.637
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.586
OOM79020.1
Hypothetical protein.
       0.572
acpP_2
Acyl carrier protein.
       0.519
kynB_2
Kynurenine formamidase.
       0.519
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.