Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM79056.1Hypothetical protein. (222 aa)    
Predicted Functional Partners:
OOM81048.1
Hypothetical protein.
  
     0.672
OOM70747.1
Hypothetical protein.
  
     0.626
OOM75529.1
Hypothetical protein.
  
     0.581
betI_1
HTH-type transcriptional regulator BetI.
  
     0.561
OOM71483.1
Hypothetical protein.
  
     0.550
OOM75955.1
Hypothetical protein.
  
     0.539
OOM74349.1
Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
  
     0.511
OOM79558.1
Transglutaminase-like superfamily protein.
  
     0.485
OOM75957.1
Hypothetical protein.
  
     0.483
OOM79593.1
FMN-binding domain protein.
  
     0.481
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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