STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recF_2DNA replication and repair protein RecF. (683 aa)    
Predicted Functional Partners:
hsdR_1
Type I restriction enzyme R protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.718
OOM77261.1
Divergent AAA domain protein.
  
    0.681
OOM81900.1
Putative type-1 restriction enzyme specificity protein.
  
  
 0.676
hsdS
Type-1 restriction enzyme EcoKI specificity protein.
  
  
 0.676
OOM74702.1
Hypothetical protein.
   
    0.656
OOM76681.1
Hypothetical protein.
  
    0.644
OOM82270.1
Alginate lyase.
 
     0.612
OOM81751.1
Type I restriction enzyme R protein N terminus (HSDR_N).
  
    0.608
hsdM
Type I restriction enzyme EcoKI M protein.
  
  
 0.597
OOM76984.1
Putative type I restriction enzymeP M protein.
  
  
 0.597
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.