Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM78158.1Hypothetical protein. (176 aa)    
Predicted Functional Partners:
OOM71480.1
Hypothetical protein.
  
     0.760
tcaR
HTH-type transcriptional regulator TcaR.
  
     0.759
ywaC_1
GTP pyrophosphokinase YwaC.
  
     0.736
pipB2
Secreted effector protein pipB2.
  
     0.730
OOM72053.1
Hypothetical protein.
  
     0.666
cinA_1
Putative competence-damage inducible protein; Belongs to the CinA family.
     
 0.648
OOM79757.1
AIG2-like family protein.
  
     0.644
agrB_1
Accessory protein regulator protein B.
  
     0.599
trxB_5
Thioredoxin reductase.
 
     0.595
OOM72055.1
Hypothetical protein.
  
     0.586
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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