Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nifJ_1Pyruvate-flavodoxin oxidoreductase. (1169 aa)    
Predicted Functional Partners:
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 0.999
OOM80631.1
Ferredoxin-2.
  
 0.997
OOM79019.1
Hypothetical protein.
  
 0.997
OOM78537.1
Indolepyruvate oxidoreductase subunit beta.
  
 0.997
sfrB_1
NADPH-Fe(3+) oxidoreductase subunit beta.
  
 0.992
OOM81855.1
Ferredoxin.
  
 0.991
frdA
Fumarate reductase flavoprotein subunit.
  
 0.991
OOM75589.1
Ferredoxin.
  
 0.991
fccA
Fumarate reductase flavoprotein subunit precursor.
  
 0.991
OOM73821.1
Ferredoxin-2.
  
 0.991
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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