Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
OOM77916.1FlgN protein. (136 aa)    
Predicted Functional Partners:
fliC2
Flagellin 2.
  
    0.926
cheV
Chemotaxis protein CheV.
  
    0.916
cheW_3
Chemotaxis protein CheW.
  
    0.860
fliN
Flagellar motor switch protein FliN.
       0.855
fliM
Flagellar motor switch protein FliM.
       0.829
OOM77915.1
Anti-sigma-28 factor, FlgM.
       0.829
flgK
Flagellar hook-associated protein 1; Belongs to the flagella basal body rod proteins family.
  
    0.704
cheW_2
Chemotaxis protein CheW.
  
    0.696
hag_1
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
    0.659
cheY_3
Chemotaxis protein CheY.
       0.610
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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