Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
kdsB3-deoxy-manno-octulosonate cytidylyltransferase. (221 aa)    
Predicted Functional Partners:
legI
N,N'-diacetyllegionaminic acid synthase.
 
  
 0.945
pseG
UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase.
 
  
 0.944
pseI
Pseudaminic acid synthase.
 
  
 0.918
pseB
UDP-N-acetylglucosamine 4,6-dehydratase.
 
     0.822
neuA
N-acylneuraminate cytidylyltransferase.
 
  
 
0.760
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
   
  0.704
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
   0.701
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
   0.701
pphA
Phosphonopyruvate hydrolase.
  
    0.680
OOM75016.1
Hypothetical protein.
 
     0.666
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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