Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM77759.1Hypothetical protein. (192 aa)    
Predicted Functional Partners:
mecR1
Methicillin resistance mecR1 protein.
   
  0.766
blaI
Penicillinase repressor.
    
 0.738
OOM74295.1
Hypothetical protein.
 
  
 0.715
OOM77892.1
Beta-monoglucosyldiacylglycerol synthase.
  
     0.512
OOM82503.1
N-acetylmuramoyl-L-alanine amidase.
     
  0.479
OOM82119.1
Phage-related minor tail protein.
  
 
  0.452
lytA_20
Autolysin.
  
  
  0.431
OOM75099.1
Cna protein B-type domain protein.
     
  0.416
OOM73846.1
Hypothetical protein.
     
  0.416
pgaB_2
poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase precursor.
 
   
 0.412
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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