Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
mcbRHTH-type transcriptional regulator McbR. (218 aa)    
Predicted Functional Partners:
OOM78541.1
Transcriptional regulator NanR.
  
     0.773
OOM75935.1
Colanic acid/biofilm transcriptional regulator.
  
     0.773
OOM82342.1
Transcriptional regulator NanR.
  
     0.736
lutR_2
HTH-type transcriptional regulator LutR.
 
  
 0.729
lutR_1
HTH-type transcriptional regulator LutR.
 
  
 0.722
lldR_2
Putative L-lactate dehydrogenase operon regulatory protein.
 
  
 0.652
ilvH
Acetolactate synthase small subunit.
  
    0.586
prmC
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
   
   0.552
ilvN
Acetolactate synthase isozyme 1 small subunit.
   
    0.514
yvoA
HTH-type transcriptional repressor YvoA.
  
   
 0.443
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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