Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trmFOmethylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO. (420 aa)    
Predicted Functional Partners:
grsB_3
Gramicidin S synthase 2.
  
 
 0.930
puuB
Gamma-glutamylputrescine oxidoreductase.
  
 
 0.917
mmgC
acyl-CoA dehydrogenase.
  
 
 0.914
mbtB_1
Phenyloxazoline synthase MbtB.
  
 
 0.907
lgrD_4
Linear gramicidin synthase subunit D.
  
 
 0.895
OOM75750.1
Hypothetical protein.
  
 
 0.885
ppsC_1
Plipastatin synthase subunit C.
  
 
 0.857
lgrD_1
Linear gramicidin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.857
lgrD_3
Linear gramicidin synthase subunit D.
  
 
 0.857
OOM79751.1
Decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
  
 
 0.835
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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