ftsH_2 protein (Clostridium puniceum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Clostridium puniceum

NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OOM75737.1	atpA	CLPUN_30920	CLPUN_50450	30S ribosomal protein S1 homolog.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.715
OOM75737.1	ftsH_2	CLPUN_30920	CLPUN_22200	30S ribosomal protein S1 homolog.	ATP-dependent zinc metalloprotease FtsH.	0.801
OOM75737.1	rplI	CLPUN_30920	CLPUN_50010	30S ribosomal protein S1 homolog.	50S ribosomal protein L9; Binds to the 23S rRNA.	0.953
OOM75737.1	rplM	CLPUN_30920	CLPUN_09310	30S ribosomal protein S1 homolog.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.967
OOM75737.1	rplQ	CLPUN_30920	CLPUN_09260	30S ribosomal protein S1 homolog.	50S ribosomal protein L17.	0.968
OOM75737.1	rpmF	CLPUN_30920	CLPUN_47440	30S ribosomal protein S1 homolog.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.925
OOM75737.1	rps1	CLPUN_30920	CLPUN_22950	30S ribosomal protein S1 homolog.	30S ribosomal protein S1; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.	0.844
OOM75737.1	rpsH	CLPUN_30920	CLPUN_09100	30S ribosomal protein S1 homolog.	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.977
OOM75737.1	rpsK	CLPUN_30920	CLPUN_09230	30S ribosomal protein S1 homolog.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.990
atpA	OOM75737.1	CLPUN_50450	CLPUN_30920	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	30S ribosomal protein S1 homolog.	0.715
atpA	ftsH_2	CLPUN_50450	CLPUN_22200	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	ATP-dependent zinc metalloprotease FtsH.	0.874
atpA	rplI	CLPUN_50450	CLPUN_50010	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	50S ribosomal protein L9; Binds to the 23S rRNA.	0.821
atpA	rplM	CLPUN_50450	CLPUN_09310	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.608
atpA	rplQ	CLPUN_50450	CLPUN_09260	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	50S ribosomal protein L17.	0.866
atpA	rpmF	CLPUN_50450	CLPUN_47440	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.902
atpA	rps1	CLPUN_50450	CLPUN_22950	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	30S ribosomal protein S1; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.	0.715
atpA	rpsH	CLPUN_50450	CLPUN_09100	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.896
atpA	rpsK	CLPUN_50450	CLPUN_09230	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.893
ftsH_2	OOM75737.1	CLPUN_22200	CLPUN_30920	ATP-dependent zinc metalloprotease FtsH.	30S ribosomal protein S1 homolog.	0.801
ftsH_2	atpA	CLPUN_22200	CLPUN_50450	ATP-dependent zinc metalloprotease FtsH.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.874