Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lptB_1Lipopolysaccharide export system ATP-binding protein LptB. (256 aa)    
Predicted Functional Partners:
OOM77562.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
OOM69957.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
livH_1
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.995
braC_1
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.
 
 
 0.991
livH_2
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.982
livF_1
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
 
0.978
braC_2
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.
 
 
 0.971
livF_2
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
 
0.911
yxlF_1
Putative ABC transporter ATP-binding protein YxlF.
  
 
0.864
grsB_3
Gramicidin S synthase 2.
    
 0.562
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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