Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gmuR_1HTH-type transcriptional regulator GmuR. (236 aa)    
Predicted Functional Partners:
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.789
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.789
lutR_1
HTH-type transcriptional regulator LutR.
  
  
 0.784
lldR_1
Putative L-lactate dehydrogenase operon regulatory protein.
  
  
 0.751
lldR_2
Putative L-lactate dehydrogenase operon regulatory protein.
  
  
 0.750
yvoA
HTH-type transcriptional repressor YvoA.
  
     0.708
bglK_2
Beta-glucoside kinase.
  
 
  0.619
ccpA_2
Catabolite control protein A.
  
   
 0.588
bglK_1
Beta-glucoside kinase.
  
 
  0.562
cytR_2
HTH-type transcriptional repressor CytR.
  
   
 0.559
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.