Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM77030.1Hypothetical protein. (77 aa)    
Predicted Functional Partners:
grsB_3
Gramicidin S synthase 2.
  
 0.970
lgrD_4
Linear gramicidin synthase subunit D.
  
 0.888
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.816
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.816
mbtB_1
Phenyloxazoline synthase MbtB.
  
 0.805
ppsC_1
Plipastatin synthase subunit C.
   
 0.800
lgrD_1
Linear gramicidin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 0.800
lgrD_3
Linear gramicidin synthase subunit D.
   
 0.800
OOM73808.1
Hypothetical protein.
  
     0.709
OOM78623.1
Transposase.
  
    0.705
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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