Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tycC_1Tyrocidine synthase 3; Belongs to the ATP-dependent AMP-binding enzyme family. (2643 aa)    
Predicted Functional Partners:
lgrD_4
Linear gramicidin synthase subunit D.
 
 
  0.840
yojI
ABC transporter ATP-binding protein YojI.
 
     0.836
dhbF
Dimodular nonribosomal peptide synthase.
  
    0.778
lgrE_1
Linear gramicidin dehydrogenase LgrE.
 
     0.775
lgrE_2
Linear gramicidin dehydrogenase LgrE.
 
     0.774
lgrE_3
Linear gramicidin dehydrogenase LgrE.
 
     0.774
sfp
4'-phosphopantetheinyl transferase sfp; Belongs to the P-Pant transferase superfamily.
  
     0.748
ydaF_2
Putative ribosomal N-acetyltransferase YdaF.
 
    0.718
ppsC_1
Plipastatin synthase subunit C.
 
   
0.675
miaB_2
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase.
 
    
0.672
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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