Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OOM76848.1Xylose isomerase-like TIM barrel. (303 aa)    
Predicted Functional Partners:
fruA_1
PTS system fructose-specific EIIABC component.
  
 
  0.758
fruA_3
PTS system fructose-specific EIIABC component.
  
 
  0.758
xylB
Xylulose kinase.
  
 
 0.683
pheA
P-protein.
     
 0.664
grsB_3
Gramicidin S synthase 2.
  
 
 0.534
ycjS_3
Putative oxidoreductase YcjS.
 
 
 0.521
afr_1
1,5-anhydro-D-fructose reductase.
 
 
 0.506
kdgK_1
2-dehydro-3-deoxygluconokinase.
  
 
 0.502
ydjH
Putative sugar kinase YdjH; Belongs to the carbohydrate kinase PfkB family.
  
 
 0.502
kdgK_2
2-dehydro-3-deoxygluconokinase.
  
 
 0.502
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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