Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fprA2Flavo-diiron protein FprA2. (842 aa)    
Predicted Functional Partners:
mmgC
acyl-CoA dehydrogenase.
  
 0.988
OOM76860.1
Rubredoxin.
 
 0.981
OOM76129.1
Iron hydrogenase 1.
  
 0.975
rubR2
Rubredoxin-2.
 
 0.953
nasD
Nitrite reductase.
 
  
 0.949
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.935
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.935
OOM74516.1
Hypothetical protein; Iron only hydrogenase large subunit, C-terminal domain.
  
 
 0.909
dfx
Desulfoferrodoxin.
  
  
 0.868
sfrB_1
NADPH-Fe(3+) oxidoreductase subunit beta.
    
 0.860
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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