Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xylHXylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family. (389 aa)    
Predicted Functional Partners:
chvE
Multiple sugar-binding periplasmic receptor ChvE precursor.
 
 0.999
rbsA
Ribose import ATP-binding protein RbsA.
 
 
 0.992
xylG
Xylose import ATP-binding protein XylG.
 
 
 0.986
mglA_1
Galactose/methyl galactoside import ATP-binding protein MglA.
 
 
 0.939
mglB_2
D-galactose-binding periplasmic protein precursor.
 
 
 0.814
mglB_5
D-galactose-binding periplasmic protein precursor.
 
 
 0.781
mglB_7
D-galactose-binding periplasmic protein precursor.
 
 
 0.757
mglB_11
D-galactose-binding periplasmic protein precursor.
 
 
 0.740
mglB_9
D-galactose-binding periplasmic protein precursor.
 
 
 0.725
mglB_8
D-galactose-binding periplasmic protein precursor.
 
 
 0.694
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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