Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
btr_2HTH-type transcriptional activator Btr. (353 aa)    
Predicted Functional Partners:
chbR_4
HTH-type transcriptional regulator ChbR.
  
   0.788
araC_1
Arabinose operon regulatory protein.
 
 
 0.788
marA_1
Multiple antibiotic resistance protein MarA.
  
   0.764
adaA_2
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
 
   0.760
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 0.749
btr_1
HTH-type transcriptional activator Btr.
  
     0.742
yesS_1
HTH-type transcriptional regulator YesS.
  
     0.739
araC_4
Arabinose operon regulatory protein.
  
     0.735
rhaS_6
HTH-type transcriptional activator RhaS.
  
     0.725
melR_5
Melibiose operon regulatory protein.
  
     0.724
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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