Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM76424.1Hypothetical protein. (68 aa)    
Predicted Functional Partners:
OOM76423.1
Hypothetical protein.
 
     0.955
spoVAD_1
Stage V sporulation protein AD.
 
     0.901
OOM76425.1
Hypothetical protein.
 
     0.900
OOM76422.1
SpoVA protein.
 
     0.886
OOM76420.1
SpoVA protein.
 
     0.820
OOM77548.1
Hypothetical protein.
  
     0.592
OOM77547.1
Hypothetical protein.
  
     0.584
OOM77549.1
Hypothetical protein.
  
     0.577
OOM74187.1
Hypothetical protein.
  
     0.532
OOM78313.1
Hypothetical protein.
  
     0.498
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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