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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOM76424.1Hypothetical protein. (68 aa)    
Predicted Functional Partners:
OOM76423.1
Hypothetical protein.
 
     0.964
OOM76425.1
Hypothetical protein.
 
     0.917
spoVAD_1
Stage V sporulation protein AD.
 
     0.906
OOM76422.1
SpoVA protein.
 
     0.891
OOM76420.1
SpoVA protein.
 
     0.828
OOM77548.1
Hypothetical protein.
  
     0.592
OOM77547.1
Hypothetical protein.
  
     0.584
OOM77549.1
Hypothetical protein.
  
     0.577
OOM74187.1
Hypothetical protein.
  
     0.532
OOM78313.1
Hypothetical protein.
  
     0.498
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.