Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM76248.1Hypothetical protein. (123 aa)    
Predicted Functional Partners:
OOM82005.1
Transposase DDE domain protein.
 
     0.958
OOM71813.1
Transposase DDE domain protein.
 
     0.955
OOM75010.1
Hypothetical protein.
  
     0.761
OOM79123.1
Archaeal putative transposase.
  
     0.754
OOM82533.1
Transposase DDE domain protein.
  
     0.716
OOM79187.1
Transposase DDE domain protein.
  
     0.703
OOM79118.1
Transposase DDE domain protein.
  
     0.689
OOM81646.1
Hypothetical protein.
 
     0.591
hopD2_2
Effector protein hopD2.
  
     0.582
OOM71857.1
Putative amidase domain protein.
  
     0.562
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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