Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prpR_2Propionate catabolism operon regulatory protein. (510 aa)    
Predicted Functional Partners:
fliN
Flagellar motor switch protein FliN.
  
 
 0.940
barA_3
Signal transduction histidine-protein kinase BarA.
  
 0.910
barA_4
Signal transduction histidine-protein kinase BarA.
  
 0.910
evgS
Sensor protein EvgS precursor.
  
 0.910
cqsS_1
CAI-1 autoinducer sensor kinase/phosphatase CqsS.
  
 0.909
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.881
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.881
rpoN1
RNA polymerase sigma-54 factor 1.
 
 
 0.868
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 0.864
flhB_1
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
  
  
 0.863
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
Server load: low (22%) [HD]