thrB_4 protein (Clostridium puniceum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

thrB_4

Homoserine kinase. (322 aa)

Predicted Functional Partners:

OOM76114.1

0.686

tcmN

0.657

OOM79575.1

0.629

celCCF

0.612

manA_3

0.609

echA8

0.573

mmgC

0.570

OOM78164.1

0.568

acdA_1

0.552

acdA_2

0.552

Your Current Organism:

Clostridium puniceum

NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OOM76114.1	thrB_4	CLPUN_28380	CLPUN_28360	Helix-turn-helix domain protein.	Homoserine kinase.	0.686
OOM78164.1	thrB_4	CLPUN_20230	CLPUN_28360	Hypothetical protein.	Homoserine kinase.	0.568
OOM79575.1	manA_3	CLPUN_15230	CLPUN_27690	Xyloglucanase precursor.	Beta-mannanase/endoglucanase A precursor.	0.763
OOM79575.1	thrB_4	CLPUN_15230	CLPUN_28360	Xyloglucanase precursor.	Homoserine kinase.	0.629
acdA_1	echA8	CLPUN_21630	CLPUN_21640	acyl-CoA dehydrogenase.	Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.	0.996
acdA_1	mmgC	CLPUN_21630	CLPUN_28600	acyl-CoA dehydrogenase.	acyl-CoA dehydrogenase.	0.894
acdA_1	thrB_4	CLPUN_21630	CLPUN_28360	acyl-CoA dehydrogenase.	Homoserine kinase.	0.552
acdA_2	echA8	CLPUN_28400	CLPUN_21640	acyl-CoA dehydrogenase.	Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.	0.993
acdA_2	mmgC	CLPUN_28400	CLPUN_28600	acyl-CoA dehydrogenase.	acyl-CoA dehydrogenase.	0.894
acdA_2	thrB_4	CLPUN_28400	CLPUN_28360	acyl-CoA dehydrogenase.	Homoserine kinase.	0.552
celCCF	manA_3	CLPUN_15250	CLPUN_27690	Endoglucanase F precursor.	Beta-mannanase/endoglucanase A precursor.	0.863
celCCF	tcmN	CLPUN_15250	CLPUN_17420	Endoglucanase F precursor.	Multifunctional cyclase-dehydratase-3-O-methyl transferase TcmN.	0.464
celCCF	thrB_4	CLPUN_15250	CLPUN_28360	Endoglucanase F precursor.	Homoserine kinase.	0.612
echA8	acdA_1	CLPUN_21640	CLPUN_21630	Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.	acyl-CoA dehydrogenase.	0.996
echA8	acdA_2	CLPUN_21640	CLPUN_28400	Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.	acyl-CoA dehydrogenase.	0.993
echA8	mmgC	CLPUN_21640	CLPUN_28600	Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.	acyl-CoA dehydrogenase.	0.998
echA8	thrB_4	CLPUN_21640	CLPUN_28360	Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.	Homoserine kinase.	0.573
manA_3	OOM79575.1	CLPUN_27690	CLPUN_15230	Beta-mannanase/endoglucanase A precursor.	Xyloglucanase precursor.	0.763
manA_3	celCCF	CLPUN_27690	CLPUN_15250	Beta-mannanase/endoglucanase A precursor.	Endoglucanase F precursor.	0.863
manA_3	thrB_4	CLPUN_27690	CLPUN_28360	Beta-mannanase/endoglucanase A precursor.	Homoserine kinase.	0.609