cycB protein (Clostridium puniceum) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

cycB

Cyclodextrin-binding protein precursor. (409 aa)

Predicted Functional Partners:

malF_2

0.995

malG_2

0.995

malG_1

0.992

malF_1

0.991

ugpC_1

0.980

ugpC_2

0.980

lacF_2

0.909

ugpA_5

0.903

araP_2

0.901

ugpA_2

0.899

Your Current Organism:

Clostridium puniceum

NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
araP_2	cycB	CLPUN_24300	CLPUN_28680	L-arabinose transport system permease protein AraP.	Cyclodextrin-binding protein precursor.	0.901
araP_2	malG_1	CLPUN_24300	CLPUN_07780	L-arabinose transport system permease protein AraP.	Maltose transport system permease protein MalG.	0.973
araP_2	malG_2	CLPUN_24300	CLPUN_28700	L-arabinose transport system permease protein AraP.	Maltose transport system permease protein MalG.	0.973
araP_2	ugpA_2	CLPUN_24300	CLPUN_24150	L-arabinose transport system permease protein AraP.	Sn-glycerol-3-phosphate transport system permease protein UgpA.	0.596
araP_2	ugpC_1	CLPUN_24300	CLPUN_00810	L-arabinose transport system permease protein AraP.	Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.	0.977
araP_2	ugpC_2	CLPUN_24300	CLPUN_24120	L-arabinose transport system permease protein AraP.	Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.	0.976
cycB	araP_2	CLPUN_28680	CLPUN_24300	Cyclodextrin-binding protein precursor.	L-arabinose transport system permease protein AraP.	0.901
cycB	lacF_2	CLPUN_28680	CLPUN_31290	Cyclodextrin-binding protein precursor.	Lactose transport system permease protein LacF.	0.909
cycB	malF_1	CLPUN_28680	CLPUN_07790	Cyclodextrin-binding protein precursor.	Maltose transport system permease protein MalF.	0.991
cycB	malF_2	CLPUN_28680	CLPUN_28690	Cyclodextrin-binding protein precursor.	Maltose transport system permease protein MalF.	0.995
cycB	malG_1	CLPUN_28680	CLPUN_07780	Cyclodextrin-binding protein precursor.	Maltose transport system permease protein MalG.	0.992
cycB	malG_2	CLPUN_28680	CLPUN_28700	Cyclodextrin-binding protein precursor.	Maltose transport system permease protein MalG.	0.995
cycB	ugpA_2	CLPUN_28680	CLPUN_24150	Cyclodextrin-binding protein precursor.	Sn-glycerol-3-phosphate transport system permease protein UgpA.	0.899
cycB	ugpA_5	CLPUN_28680	CLPUN_44920	Cyclodextrin-binding protein precursor.	Sn-glycerol-3-phosphate transport system permease protein UgpA.	0.903
cycB	ugpC_1	CLPUN_28680	CLPUN_00810	Cyclodextrin-binding protein precursor.	Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.	0.980
cycB	ugpC_2	CLPUN_28680	CLPUN_24120	Cyclodextrin-binding protein precursor.	Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.	0.980
lacF_2	cycB	CLPUN_31290	CLPUN_28680	Lactose transport system permease protein LacF.	Cyclodextrin-binding protein precursor.	0.909
lacF_2	malG_1	CLPUN_31290	CLPUN_07780	Lactose transport system permease protein LacF.	Maltose transport system permease protein MalG.	0.971
lacF_2	malG_2	CLPUN_31290	CLPUN_28700	Lactose transport system permease protein LacF.	Maltose transport system permease protein MalG.	0.971
lacF_2	ugpA_2	CLPUN_31290	CLPUN_24150	Lactose transport system permease protein LacF.	Sn-glycerol-3-phosphate transport system permease protein UgpA.	0.618