Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
adaA_6Bifunctional transcriptional activator/DNA repair enzyme AdaA. (367 aa)    
Predicted Functional Partners:
melR_5
Melibiose operon regulatory protein.
 
  
  0.849
barA_3
Signal transduction histidine-protein kinase BarA.
   
 0.846
barA_4
Signal transduction histidine-protein kinase BarA.
   
 0.846
evgS
Sensor protein EvgS precursor.
   
 0.846
cqsS_1
CAI-1 autoinducer sensor kinase/phosphatase CqsS.
   
 0.841
fliN
Flagellar motor switch protein FliN.
  
 0.822
melR_8
Melibiose operon regulatory protein.
 
  
  0.815
chbR_4
HTH-type transcriptional regulator ChbR.
 
  
  0.813
fliM
Flagellar motor switch protein FliM.
  
 0.798
tetD_3
Transposon Tn10 TetD protein.
  
  
  0.795
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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