Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM75899.1Hypothetical protein. (194 aa)    
Predicted Functional Partners:
OOM75898.1
Mor transcription activator family protein.
 
     0.847
OOM75932.1
Mor transcription activator family protein.
 
     0.679
OOM74530.1
Mor transcription activator family protein.
 
     0.605
OOM77131.1
Hypothetical protein.
  
     0.602
OOM75970.1
Hypothetical protein.
 
     0.602
OOM81057.1
Hypothetical protein.
  
     0.517
cssS
Sensor histidine kinase CssS.
  
    0.503
ytrF
ABC transporter permease YtrF precursor.
  
     0.499
slyA_6
Transcriptional regulator SlyA.
  
     0.491
malT_2
HTH-type transcriptional regulator MalT.
  
     0.484
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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