Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
OOM75912.1ABC-2 family transporter protein. (247 aa)    
Predicted Functional Partners:
OOM75911.1
ABC-2 family transporter protein.
 
     0.941
ybhF_3
Putative ABC transporter ATP-binding protein YbhF.
 
 
 0.913
yycG_2
Sensor histidine kinase YycG.
 
     0.777
OOM76689.1
Valine--pyruvate transaminase.
  
     0.703
yxlF_4
Putative ABC transporter ATP-binding protein YxlF.
 
 
 0.683
OOM76433.1
ABC-2 family transporter protein.
  
  
  0.635
yxlF_5
Putative ABC transporter ATP-binding protein YxlF.
 
 
 0.632
yxlF_6
Putative ABC transporter ATP-binding protein YxlF.
 
 
 0.629
OOM73628.1
ABC-2 family transporter protein.
  
  
  0.621
ytrF
ABC transporter permease YtrF precursor.
  
   
 0.613
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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