Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pbpE_2Penicillin-binding protein 4*. (407 aa)    
Predicted Functional Partners:
spoVD_2
Stage V sporulation protein D.
    
 0.745
penA
Penicillin-binding protein 2B.
     
 0.744
dacF
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
     
 0.734
nag3
beta-N-acetylglucosaminidase/beta-glucosidase.
 
 
 0.697
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.656
OOM82463.1
Beta-glucosidase BoGH3A precursor.
  
 
 0.653
bglX_1
Periplasmic beta-glucosidase precursor.
  
 
 0.653
bglX_2
Periplasmic beta-glucosidase precursor.
  
 
 0.653
xyl3A
Xylan 1,4-beta-xylosidase precursor.
  
 
 0.653
pbp
Beta-lactam-inducible penicillin-binding protein.
     
 0.629
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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