Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hupR1Hydrogenase transcriptional regulatory protein hupR1. (396 aa)    
Predicted Functional Partners:
zraS_2
Sensor protein ZraS.
 
 0.975
fliN
Flagellar motor switch protein FliN.
  
 
 0.972
barA_4
Signal transduction histidine-protein kinase BarA.
 
 0.972
barA_3
Signal transduction histidine-protein kinase BarA.
 
 0.971
evgS
Sensor protein EvgS precursor.
 
 0.970
cqsS_1
CAI-1 autoinducer sensor kinase/phosphatase CqsS.
 
 0.968
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 0.963
barA_2
Signal transduction histidine-protein kinase BarA.
 
 0.957
zraS_1
Sensor protein ZraS.
 
 
 0.955
OOM76852.1
Hypothetical protein.
  
 0.946
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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