Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ganABeta-galactosidase GanA. (690 aa)    
Predicted Functional Partners:
cbgA
Beta-galactosidase.
   
 0.849
agaA
Alpha-galactosidase A precursor.
 
 
 0.773
mro
Aldose 1-epimerase precursor; Converts alpha-aldose to the beta-anomer.
  
 
 0.752
yicI_2
Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.745
yicI_1
Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.743
yicI_3
Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.743
lacZ_2
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
   
 0.742
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
   
 
  0.721
lacG
Lactose transport system permease protein LacG.
 
    0.684
lacF_2
Lactose transport system permease protein LacF.
 
    0.682
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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