STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ganABeta-galactosidase GanA. (690 aa)    
Predicted Functional Partners:
cbgA
Beta-galactosidase.
   
 0.863
agaA
Alpha-galactosidase A precursor.
 
 
 0.803
mro
Aldose 1-epimerase precursor; Converts alpha-aldose to the beta-anomer.
  
 
 0.796
yicI_2
Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.757
yicI_1
Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.755
yicI_3
Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.755
lacG
Lactose transport system permease protein LacG.
 
  
 0.702
lacF_2
Lactose transport system permease protein LacF.
 
    0.693
rafA_2
Alpha-galactosidase.
 
  
 0.677
rafA_3
Alpha-galactosidase.
 
  
 0.677
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.