Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM75682.1Hypothetical protein. (109 aa)    
Predicted Functional Partners:
copA_3
Copper-exporting P-type ATPase A.
  
 
 0.853
copA_2
Copper-exporting P-type ATPase A.
  
 
 0.758
copZ
Copper chaperone CopZ.
  
 
 0.758
OOM81678.1
Hypothetical protein.
  
 
 0.756
OOM71473.1
Heavy-metal-associated domain protein.
  
 
 0.756
OOM75924.1
Hypothetical protein; Transcriptional repressor SmtB homolog.
  
  
 0.661
ribD_2
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
    0.467
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.423
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.423
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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