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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoR_6Alkaline phosphatase synthesis sensor protein PhoR. (460 aa)    
Predicted Functional Partners:
regX3_2
Sensory transduction protein regX3.
 
 0.988
cqsS_1
CAI-1 autoinducer sensor kinase/phosphatase CqsS.
 0.956
barA_3
Signal transduction histidine-protein kinase BarA.
 
0.955
barA_4
Signal transduction histidine-protein kinase BarA.
0.953
evgS
Sensor protein EvgS precursor.
  
 0.948
rcsC_2
Sensor histidine kinase RcsC.
 
0.939
barA_1
Signal transduction histidine-protein kinase BarA.
  
0.907
zraS_2
Sensor protein ZraS.
 0.906
hssR_1
Heme response regulator HssR.
 0.902
hssR_2
Heme response regulator HssR.
 
 0.889
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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