Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lon2_1Lon protease 2. (559 aa)    
Predicted Functional Partners:
OOM80999.1
Stage III sporulation protein SpoAB.
  
    0.773
OOM80997.1
Stage III sporulation protein AC/AD protein family protein.
  
    0.694
spoIIM
Stage II sporulation protein M.
  
    0.670
spoIIIAE
Stage III sporulation protein AE precursor.
  
    0.639
ytfJ
Putative spore protein YtfJ.
  
    0.599
yabG
Sporulation-specific protease YabG.
  
     0.577
OOM71812.1
Hypothetical protein.
 
     0.568
OOM74719.1
Hypothetical protein.
  
     0.561
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
  
 0.552
OOM81053.1
YtxC-like family protein.
  
    0.527
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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